HL_9Y4G_070

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCUGUCCCCGCCGGCGGCCCCGCCGCGCGCCGGGACC

Length

38 nucleotides

Bulged bases

9Y4G|1|A6|C|4777, 9Y4G|1|A6|C|4778, 9Y4G|1|A6|U|4779, 9Y4G|1|A6|G|4780, 9Y4G|1|A6|U|4781, 9Y4G|1|A6|C|4782, 9Y4G|1|A6|C|4783, 9Y4G|1|A6|C|4784, 9Y4G|1|A6|C|4785, 9Y4G|1|A6|G|4786, 9Y4G|1|A6|C|4787, 9Y4G|1|A6|C|4788, 9Y4G|1|A6|G|4789, 9Y4G|1|A6|G|4790, 9Y4G|1|A6|C|4791, 9Y4G|1|A6|G|4792, 9Y4G|1|A6|G|4793, 9Y4G|1|A6|C|4840, 9Y4G|1|A6|C|4841, 9Y4G|1|A6|C|4842, 9Y4G|1|A6|C|4843, 9Y4G|1|A6|G|4844, 9Y4G|1|A6|C|4845, 9Y4G|1|A6|C|4846, 9Y4G|1|A6|G|4847, 9Y4G|1|A6|C|4848, 9Y4G|1|A6|G|4849, 9Y4G|1|A6|C|4850, 9Y4G|1|A6|G|4851, 9Y4G|1|A6|C|4852, 9Y4G|1|A6|C|4853, 9Y4G|1|A6|G|4854, 9Y4G|1|A6|G|4855, 9Y4G|1|A6|G|4856, 9Y4G|1|A6|A|4857, 9Y4G|1|A6|C|4858

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|A6|G|4776
9Y4G|1|A6|C|4777
9Y4G|1|A6|C|4778
9Y4G|1|A6|U|4779
9Y4G|1|A6|G|4780
9Y4G|1|A6|U|4781
9Y4G|1|A6|C|4782
9Y4G|1|A6|C|4783
9Y4G|1|A6|C|4784
9Y4G|1|A6|C|4785
9Y4G|1|A6|G|4786
9Y4G|1|A6|C|4787
9Y4G|1|A6|C|4788
9Y4G|1|A6|G|4789
9Y4G|1|A6|G|4790
9Y4G|1|A6|C|4791
9Y4G|1|A6|G|4792
9Y4G|1|A6|G|4793
9Y4G|1|A6|C|4840
9Y4G|1|A6|C|4841
9Y4G|1|A6|C|4842
9Y4G|1|A6|C|4843
9Y4G|1|A6|G|4844
9Y4G|1|A6|C|4845
9Y4G|1|A6|C|4846
9Y4G|1|A6|G|4847
9Y4G|1|A6|C|4848
9Y4G|1|A6|G|4849
9Y4G|1|A6|C|4850
9Y4G|1|A6|G|4851
9Y4G|1|A6|C|4852
9Y4G|1|A6|C|4853
9Y4G|1|A6|G|4854
9Y4G|1|A6|G|4855
9Y4G|1|A6|G|4856
9Y4G|1|A6|A|4857
9Y4G|1|A6|C|4858
9Y4G|1|A6|C|4859

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain CM

60S ribosomal protein L14

Chain CO

60S ribosomal protein L13a