HL_9Y4G_072

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

9Y4G|1|A6|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_072 not in the Motif Atlas

Homologous match to HL_9H3G_071

Geometric discrepancy: 0.1163

The information below is about HL_9H3G_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.3

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9Y4G|1|A6|G|4975
9Y4G|1|A6|U|4976
9Y4G|1|A6|A|4977
9Y4G|1|A6|G|4978
9Y4G|1|A6|A|4979
9Y4G|1|A6|C|4980
9Y4G|1|A6|G|4981
9Y4G|1|A6|A|4982
9Y4G|1|A6|C|4983

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CP

60S ribosomal protein L17