HL_9Y4G_079

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

9Y4G|1|A8|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_079 not in the Motif Atlas

Homologous match to HL_9AXU_073

Geometric discrepancy: 0.3332

The information below is about HL_9AXU_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

16

Unit IDs

9Y4G|1|A8|C|107
9Y4G|1|A8|A|108
9Y4G|1|A8|C|109
9Y4G|1|A8|U|110
9Y4G|1|A8|U|111
9Y4G|1|A8|G|112

Current chains

Chain A8

5.8S rRNA (157-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CX

60S ribosomal protein L23a

Chain Cj

60S ribosomal protein L37

Chain Cl

60S ribosomal protein L39