HL_9Y4G_109

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGCGGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_109 not in the Motif Atlas

Geometric match to HL_8OI5_024

Geometric discrepancy: 0.1445

The information below is about HL_8OI5_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9Y4G|1|B2|A|1421
9Y4G|1|B2|G|1422
9Y4G|1|B2|C|1423
9Y4G|1|B2|G|1424
9Y4G|1|B2|G|1425
9Y4G|1|B2|U|1426

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AT

40S ribosomal protein S19