HL_9Y4G_120

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_120 not in the Motif Atlas

Homologous match to HL_7EQJ_006

Geometric discrepancy: 0.2141

The information below is about HL_7EQJ_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

9Y4G|1|Cc|G|54
9Y4G|1|Cc|U|55
9Y4G|1|Cc|U|56
9Y4G|1|Cc|C|57
9Y4G|1|Cc|A|58
9Y4G|1|Cc|A|59
9Y4G|1|Cc|A|60
9Y4G|1|Cc|U|61
9Y4G|1|Cc|C|62

Current chains

Chain Cc

tRNA (78-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain Cz

60S ribosomal protein L10a