HL_9Y79_002
3D structure
- PDB id
- 9Y79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Y79_002 not in the Motif Atlas
- Homologous match to HL_9J4O_001
- Geometric discrepancy: 0.2013
- The information below is about HL_9J4O_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9Y79|1|A|G|31
9Y79|1|A|C|32
9Y79|1|A|U|33
9Y79|1|A|C|34
9Y79|1|A|A|35
9Y79|1|A|U|36
9Y79|1|A|A|37
9Y79|1|A|A|38
9Y79|1|A|C|39
Current chains
- Chain A
- E-site and P-site tRNA (fMet)
Nearby chains
- Chain 7
- mRNA with 39 nt long spacer
- Chain B
- Transfer RNA; tRNA
- Chain D
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- Small ribosomal subunit protein uS7
- Chain Q
- 30S ribosomal protein S11
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