9Y79 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9Y79_005 | 1/B/31:39 | No text annotation | homologous HL_2ZZM_002 HL_33487.2 | |
| HL_9Y79_007 | 1/D/12:22 | No text annotation | homologous HL_6CZR_072 NA | |
| HL_9Y79_009 | 1/D/158:163 | GNRA | homologous HL_6CZR_074 NA | |
| HL_9Y79_010 | 1/D/186:191 | GNRA | geometric HL_9DFE_044 HL_34789.6 | |
| HL_9Y79_012 | 1/D/259:267 | GNRA related | homologous HL_6CZR_077 NA | |
| HL_9Y79_013 | 1/D/296:301 | GNRA | homologous HL_6CZR_078 NA | |
| HL_9Y79_014 | 1/D/320:333 | No text annotation | homologous HL_6CZR_079 NA | |
| HL_9Y79_015 | 1/D/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_9Y79_016 | 1/D/379:384 | GNRA | homologous HL_6CZR_081 NA | |
| HL_9Y79_017 | 1/D/419:424 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_9Y79_018 | 1/D/462:470 | No text annotation | geometric HL_9H3G_100 HL_98423.5 | |
| HL_9Y79_019 | 1/D/617:623 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_9Y79_020 | 1/D/689:698 | No text annotation | homologous HL_6CZR_086 NA | |
| HL_9Y79_021 | 1/D/726:731 | GNRA | homologous HL_6CZR_087 NA | |
| HL_9Y79_022 | 1/D/786:796 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_9Y79_024 | 1/D/862:867 | GNRA | homologous HL_6CZR_090 NA | |
| HL_9Y79_025 | 1/D/897:902 | GNRA | homologous HL_6CZR_091 NA | |
| HL_9Y79_026 | 1/D/1012:1017 | No text annotation | homologous HL_6CZR_217 NA | |
| HL_9Y79_027 | 1/D/1076:1081 | GNRA | homologous HL_6CZR_095 NA | |
| HL_9Y79_028 | 1/D/1089:1096 | T-loop related | homologous HL_6CZR_096 NA | |
| HL_9Y79_029 | 1/D/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_9Y79_030 | 1/D/1165:1171 | GNRA | homologous HL_6CZR_098 NA | |
| HL_9Y79_031 | 1/D/1265:1270 | No text annotation | homologous HL_6CZR_099 NA | |
| HL_9Y79_032 | 1/D/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_6CZR_100 NA | |
| HL_9Y79_033 | 1/D/1356:1366 | No text annotation | homologous HL_6CZR_101 NA | |
| HL_9Y79_034 | 1/D/1449:1454 | UNCG | geometric HL_1I6U_001 HL_61337.6 | |
| HL_9Y79_035 | 1/a/59:68 | No text annotation | geometric HL_8B0X_033 HL_35677.5 | |
| HL_9Y79_036 | 1/a/87:95 | No text annotation | geometric HL_8B0X_034 HL_65821.1 | |
| HL_9Y79_037 | 1/a/123:128 | No text annotation | homologous HL_7A0S_003 HL_82710.4 | |
| HL_9Y79_038 | 1/a/137:142 | UNCG | geometric HL_6QN3_001 HL_61337.6 | |
| HL_9Y79_039 | 1/a/158:168 | No text annotation | ||
| HL_9Y79_040 | 1/a/194:201 | No text annotation | homologous HL_7A0S_006 HL_02262.1 | |
| HL_9Y79_041 | 1/a/225:230 | No text annotation | geometric HL_8B0X_039 HL_63151.1 | |
| HL_9Y79_042 | 1/a/246:252 | No text annotation | homologous HL_7A0S_008 HL_76371.4 | |
| HL_9Y79_043 | 1/a/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.5 | |
| HL_9Y79_044 | 1/a/319:323 | No text annotation | homologous HL_7A0S_011 HL_75660.10 | |
| HL_9Y79_045 | 1/a/327:335 | T-loop with unstacked turn | homologous HL_7A0S_012 HL_27670.6 | |
| HL_9Y79_046 | 1/a/382:392 | No text annotation | homologous HL_7A0S_013 HL_91503.8 | |
| HL_9Y79_047 | 1/a/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.5 | |
| HL_9Y79_048 | 1/a/462:467 | GNRA | homologous HL_7A0S_015 HL_34789.6 | |
| HL_9Y79_049 | 1/a/487:493 | GNRA | homologous HL_7A0S_016 HL_34789.6 | |
| HL_9Y79_051 | 1/a/566:575 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_33597.6 | |
| HL_9Y79_052 | 1/a/611:617 | No text annotation | ||
| HL_9Y79_053 | 1/a/629:634 | GNRA | homologous HL_7A0S_020 HL_34789.6 | |
| HL_9Y79_054 | 1/a/641:647 | No text annotation | geometric HL_8B0X_051 HL_07380.1 | |
| HL_9Y79_055 | 1/a/712:719 | No text annotation | geometric HL_8B0X_052 HL_98423.5 | |
| HL_9Y79_056 | 1/a/779:785 | UNCG variation | homologous HL_7A0S_023 HL_23875.1 | |
| HL_9Y79_057 | 1/a/826:831 | No text annotation | homologous HL_7A0S_024 HL_27530.3 | |
| HL_9Y79_058 | 1/a/883:893 | No text annotation | ||
| HL_9Y79_059 | 1/a/978:985 | No text annotation | homologous HL_7A0S_027 HL_47171.3 | |
| HL_9Y79_063 | 1/a/1222:1227 | GNRA | homologous HL_7A0S_031 HL_34789.6 | |
| HL_9Y79_064 | 1/a/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.6 | |
| HL_9Y79_065 | 1/a/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.2 | |
| HL_9Y79_066 | 1/a/1363:1368 | GNRA variation | homologous HL_7A0S_034 HL_34789.6 | |
| HL_9Y79_067 | 1/a/1389:1398 | No text annotation | homologous HL_7A0S_035 HL_77449.3 | |
| HL_9Y79_068 | 1/a/1451:1459 | No text annotation | geometric HL_8B0X_064 HL_00557.1 | |
| HL_9Y79_069 | 1/a/1492:1498 | No text annotation | homologous HL_7A0S_037 HL_39243.1 | |
| HL_9Y79_071 | 1/a/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_90436.5 | |
| HL_9Y79_072 | 1/a/1630:1636 | No text annotation | geometric HL_8B0X_069 HL_34789.6 | |
| HL_9Y79_073 | 1/a/1691:1696 | UNCG | homologous HL_7A0S_042 HL_61337.6 | |
| HL_9Y79_075 | 1/a/1752:1756 | No text annotation | homologous HL_7A0S_044 HL_80709.5 | |
| HL_9Y79_076 | 1/a/1777:1787 | No text annotation | geometric HL_4WF9_043 HL_87681.3 | |
| HL_9Y79_077 | 1/a/1806:1811 | GNRA related | geometric HL_3OXE_002 HL_37569.4 | |
| HL_9Y79_079 | 1/a/1949:1957 | No text annotation | homologous HL_7A0S_048 HL_33350.1 | |
| HL_9Y79_081 | 1/a/2209:2215 | No text annotation | geometric HL_8B0X_079 HL_33632.1 | |
| HL_9Y79_082 | 1/a/2264:2276 | No text annotation | homologous HL_7A0S_053 HL_02042.3 | |
| HL_9Y79_083 | 1/a/2303:2313 | No text annotation | ||
| HL_9Y79_084 | 1/a/2324:2331 | Pseudoknot geometry | homologous HL_7A0S_055 HL_52651.4 | |
| HL_9Y79_085 | 1/a/2356:2361 | No text annotation | geometric HL_8B0X_084 HL_34789.6 | |
| HL_9Y79_086 | 1/a/2374:2379 | GNRA | homologous HL_7A0S_057 HL_34789.6 | |
| HL_9Y79_087 | 1/a/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_51853.2 | |
| HL_9Y79_088 | 1/a/2471:2479 | No text annotation | homologous HL_7A0S_059 HL_52011.3 | |
| HL_9Y79_089 | 1/a/2528:2535 | GNRA variation | homologous HL_7A0S_060 HL_02262.1 | |
| HL_9Y79_090 | 1/a/2594:2599 | GNRA | homologous HL_7A0S_062 HL_34789.6 | |
| HL_9Y79_091 | 1/a/2658:2663 | GNRA | homologous HL_7A0S_063 HL_34789.6 | |
| HL_9Y79_092 | 1/a/2701:2706 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.4 | |
| HL_9Y79_093 | 1/a/2745:2759 | No text annotation | geometric HL_4WF9_062 HL_53269.4 | |
| HL_9Y79_095 | 1/a/2819:2827 | No text annotation | homologous HL_7A0S_067 HL_37889.3 | |
| HL_9Y79_096 | 1/a/2856:2861 | GNRA | homologous HL_7A0S_068 HL_34789.6 | |
| HL_9Y79_097 | 1/d/38:44 | No text annotation | homologous HL_4V9F_071 HL_59381.4 | |
| HL_9Y79_098 | 1/d/86:90 | Mini UNCG | geometric HL_6MSF_002 HL_90436.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9Y79_001 | No text annotation | ||
| HL_9Y79_002 | No text annotation | ||
| HL_9Y79_003 | T-loop with 2 stacked bulged bases | ||
| HL_9Y79_004 | No text annotation | ||
| HL_9Y79_006 | T-loop with 2 stacked bulged bases | ||
| HL_9Y79_008 | No text annotation | ||
| HL_9Y79_011 | No text annotation | ||
| HL_9Y79_023 | No text annotation | ||
| HL_9Y79_050 | No text annotation | ||
| HL_9Y79_060 | No text annotation | ||
| HL_9Y79_061 | GNRA with tandem sheared | ||
| HL_9Y79_062 | No text annotation | ||
| HL_9Y79_070 | UNCG | ||
| HL_9Y79_074 | No text annotation | ||
| HL_9Y79_078 | GNRA | ||
| HL_9Y79_080 | UNCG | ||
| HL_9Y79_094 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9Y79_001 | 1/D/30:32, 1/D/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_9Y79_002 | 1/D/44:45, 1/D/396:398 | Single bulged A | homologous IL_6CZR_114 NA | |
| IL_9Y79_003 | 1/D/47:52, 1/D/359:361 | No text annotation | geometric IL_8B0X_003 IL_32983.3 | |
| IL_9Y79_004 | 1/D/54:56, 1/D/356:357 | Minor groove platform | homologous IL_6CZR_116 NA | |
| IL_9Y79_005 | 1/D/63:66, 1/D/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_9Y79_006 | 1/D/67:69, 1/D/99:102 | No text annotation | geometric IL_8B0X_006 IL_05502.2 | |
| IL_9Y79_007 | 1/D/70:73, 1/D/97:98 | No text annotation | geometric IL_8B0X_007 IL_87975.2 | |
| IL_9Y79_008 | 1/D/75:76, 1/D/93:95 | No text annotation | geometric IL_8B0X_008 IL_28408.4 | |
| IL_9Y79_009 | 1/D/128:131, 1/D/231:233 | No text annotation | geometric IL_8B0X_009 IL_76400.2 | |
| IL_9Y79_010 | 1/D/132:136, 1/D/227:230 | Minor groove platform related | homologous IL_6CZR_120 NA | |
| IL_9Y79_011 | 1/D/144:146, 1/D/176:178 | Isolated cWH basepair | geometric IL_4WF9_045 IL_10892.4 | |
| IL_9Y79_012 | 1/D/147:153, 1/D/168:175 | tWH-tWH-tHW-tHW | homologous IL_6CZR_121 NA | |
| IL_9Y79_013 | 1/D/242:247, 1/D/277:284 | Kink-turn with non-sequential stacking | homologous IL_6CZR_123 NA | |
| IL_9Y79_014 | 1/D/249:252, 1/D/274:275 | No text annotation | homologous IL_6CZR_405 NA | |
| IL_9Y79_015 | 1/D/292:293, 1/D/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_9Y79_016 | 1/D/367:369, 1/D/392:393 | Single bulged U | homologous IL_6CZR_126 NA | |
| IL_9Y79_017 | 1/D/371:375, 1/D/389:390 | C-loop | homologous IL_6CZR_127 NA | |
| IL_9Y79_018 | 1/D/375:376, 1/D/387:389 | Single bulged G | homologous IL_6CZR_358 NA | |
| IL_9Y79_019 | 1/D/409:416, 1/D/427:433 | No text annotation | geometric IL_8B0X_019 IL_62329.1 | |
| IL_9Y79_020 | 1/D/440:442, 1/D/492:497 | No text annotation | geometric IL_8B0X_020 IL_02111.1 | |
| IL_9Y79_021 | 1/D/446:450, 1/D/483:488 | tWW-tWH-tHS | geometric IL_8B0X_021 IL_82100.1 | |
| IL_9Y79_022 | 1/D/450:455, 1/D/477:483 | No text annotation | homologous IL_6CZR_406 NA | |
| IL_9Y79_023 | 1/D/504:511, 1/D/540:541 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_9Y79_024 | 1/D/569:575, 1/D/880:881 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_9Y79_025 | 1/D/580:584, 1/D/757:761 | tSH-tWH-tHS | homologous IL_6CZR_135 NA | |
| IL_9Y79_026 | 1/D/594:596, 1/D/644:645 | Major groove platform | homologous IL_6CZR_407 NA | |
| IL_9Y79_027 | 1/D/597:598, 1/D/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_6CZR_137 NA | |
| IL_9Y79_028 | 1/D/605:612, 1/D/628:633 | No text annotation | homologous IL_6CZR_408 NA | |
| IL_9Y79_029 | 1/D/654:655, 1/D/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_74641.4 | |
| IL_9Y79_030 | 1/D/658:659, 1/D/746:748 | No text annotation | geometric IL_9H3G_115 IL_57267.1 | |
| IL_9Y79_031 | 1/D/662:666, 1/D/740:743 | Tandem non-canonical cWW pairs | homologous IL_6CZR_141 NA | |
| IL_9Y79_032 | 1/D/684:688, 1/D/699:706 | Kink-turn | geometric IL_8B0X_034 IL_71972.2 | |
| IL_9Y79_033 | 1/D/774:778, 1/D/804:805 | Left turn | homologous IL_6CZR_144 NA | |
| IL_9Y79_034 | 1/D/779:783, 1/D/799:803 | tSH-tWH-tHS | homologous IL_6CZR_145 NA | |
| IL_9Y79_035 | 1/D/887:894, 1/D/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_6CZR_364 NA | |
| IL_9Y79_036 | 1/D/922:923, 1/D/1393:1395 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_9Y79_037 | 1/D/925:927, 1/D/1390:1391 | Single bulged G | homologous IL_6CZR_148 NA | |
| IL_9Y79_038 | 1/D/933:935, 1/D/1380:1384 | No text annotation | homologous IL_6CZR_410 NA | |
| IL_9Y79_039 | 1/D/953:954, 1/D/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_9Y79_040 | 1/D/993:997, 1/D/1044:1045 | No text annotation | geometric IL_8B0X_042 IL_49794.1 | |
| IL_9Y79_043 | 1/D/1048:1050, 1/D/1208:1209 | No text annotation | homologous IL_6CZR_152 NA | |
| IL_9Y79_044 | 1/D/1052:1056, 1/D/1204:1206 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_9Y79_045 | 1/D/1057:1058, 1/D/1199:1203 | Minor groove platform | homologous IL_6CZR_155 NA | |
| IL_9Y79_046 | 1/D/1060:1061, 1/D/1195:1197 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_9Y79_047 | 1/D/1061:1063, 1/D/1193:1195 | Isolated non-canonical cWW pair | homologous IL_6CZR_157 NA | |
| IL_9Y79_048 | 1/D/1124:1128, 1/D/1144:1149 | No text annotation | geometric IL_8B0X_050 IL_38603.1 | |
| IL_9Y79_049 | 1/D/1129:1132, 1/D/1142:1143 | No text annotation | geometric IL_8B0X_051 IL_87975.2 | |
| IL_9Y79_050 | 1/D/1158:1161, 1/D/1175:1181 | No text annotation | geometric IL_8B0X_052 IL_32376.2 | |
| IL_9Y79_051 | 1/D/1247:1253, 1/D/1284:1290 | No text annotation | homologous IL_6CZR_160 NA | |
| IL_9Y79_052 | 1/D/1255:1259, 1/D/1276:1282 | No text annotation | ||
| IL_9Y79_053 | 1/D/1259:1263, 1/D/1272:1276 | No text annotation | geometric IL_8B0X_055 IL_87767.4 | |
| IL_9Y79_054 | 1/D/1303:1308, 1/D/1329:1334 | No text annotation | homologous IL_6CZR_164 NA | |
| IL_9Y79_055 | 1/D/1399:1401, 1/D/1501:1504 | No text annotation | homologous IL_6CZR_165 NA | |
| IL_9Y79_056 | 1/D/1412:1414, 1/D/1486:1488 | Isolated non-canonical cWW pair | homologous IL_6CZR_411 NA | |
| IL_9Y79_057 | 1/D/1416:1419, 1/D/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_9Y79_058 | 1/D/1430:1435, 1/D/1466:1470 | No text annotation | geometric IL_8B0X_062 IL_47352.3 | |
| IL_9Y79_059 | 1/D/1440:1442, 1/D/1460:1461 | No text annotation | geometric IL_8B0X_063 IL_41261.1 | |
| IL_9Y79_060 | 1/D/1445:1448, 1/D/1455:1457 | No text annotation | geometric IL_8B0X_064 IL_05502.2 | |
| IL_9Y79_061 | 1/a/24:30, 1/a/510:516 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_22311.3 | |
| IL_9Y79_062 | 1/a/36:37, 1/a/442:444 | Single bulged A | homologous IL_7A0S_002 IL_14190.4 | |
| IL_9Y79_063 | 1/a/43:44, 1/a/434:436 | Minor groove platform | homologous IL_7A0S_003 IL_98469.1 | |
| IL_9Y79_064 | 1/a/81:85, 1/a/97:105 | Kink-turn | homologous IL_7A0S_004 IL_94910.1 | |
| IL_9Y79_065 | 1/a/183:184, 1/a/212:214 | Single stack bend | homologous IL_7A0S_005 IL_15011.5 | |
| IL_9Y79_066 | 1/a/188:194, 1/a/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_62167.5 | |
| IL_9Y79_067 | 1/a/239:245, 1/a/253:258 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_8B0X_071 IL_02666.3 | |
| IL_9Y79_068 | 1/a/269:271, 1/a/366:370 | No text annotation | ||
| IL_9Y79_070 | 1/a/293:295, 1/a/343:347 | No text annotation | geometric IL_8B0X_074 IL_76658.1 | |
| IL_9Y79_071 | 1/a/481:484, 1/a/496:509 | No text annotation | geometric IL_8B0X_075 IL_44923.3 | |
| IL_9Y79_072 | 1/a/536:539, 1/a/554:557 | Double sheared | geometric IL_8B0X_076 IL_58355.4 | |
| IL_9Y79_073 | 1/a/564:566, 1/a/575:577 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_01334.1 | |
| IL_9Y79_074 | 1/a/606:610, 1/a/618:622 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.3 | |
| IL_9Y79_075 | 1/a/672:674, 1/a/806:808 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_01003.6 | |
| IL_9Y79_076 | 1/a/674:678, 1/a/799:806 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_73855.3 | |
| IL_9Y79_077 | 1/a/697:698, 1/a/763:765 | Single bulged A | homologous IL_7A0S_016 IL_14190.4 | |
| IL_9Y79_078 | 1/a/702:703, 1/a/728:730 | Single bulged G | homologous IL_7A0S_017 IL_28408.4 | |
| IL_9Y79_079 | 1/a/703:707, 1/a/724:728 | No text annotation | geometric IL_8B0X_083 IL_15190.4 | |
| IL_9Y79_080 | 1/a/738:740, 1/a/757:758 | No text annotation | geometric IL_8B0X_084 IL_48076.10 | |
| IL_9Y79_081 | 1/a/775:777, 1/a/787:791 | No text annotation | geometric IL_9E6Q_032 IL_89509.3 | |
| IL_9Y79_082 | 1/a/844:847, 1/a/933:934 | No text annotation | geometric IL_8B0X_087 IL_79144.1 | |
| IL_9Y79_083 | 1/a/844:848, 1/a/930:934 | No text annotation | geometric IL_8B0X_179 IL_01742.1 | |
| IL_9Y79_084 | 1/a/847:848, 1/a/930:933 | No text annotation | geometric IL_8B0X_088 IL_36175.2 | |
| IL_9Y79_085 | 1/a/849:850, 1/a/927:929 | No text annotation | geometric IL_8OI5_012 IL_15011.5 | |
| IL_9Y79_086 | 1/a/856:862, 1/a/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_8B0X_090 IL_94128.3 | |
| IL_9Y79_087 | 1/a/862:863, 1/a/913:915 | Minor groove platform | homologous IL_7A0S_028 IL_98469.1 | |
| IL_9Y79_088 | 1/a/864:868, 1/a/909:912 | C-loop | homologous IL_7A0S_029 IL_16301.3 | |
| IL_9Y79_089 | 1/a/870:872, 1/a/905:907 | Isolated non-canonical cWW pair | homologous IL_7A0S_030 IL_84227.1 | |
| IL_9Y79_090 | 1/a/875:879, 1/a/898:902 | No text annotation | geometric IL_8B0X_094 IL_87767.4 | |
| IL_9Y79_092 | 1/a/994:996, 1/a/1159:1160 | Single bulged C | homologous IL_7A0S_032 IL_05642.5 | |
| IL_9Y79_093 | 1/a/998:1002, 1/a/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_08938.3 | |
| IL_9Y79_094 | 1/a/1004:1011, 1/a/1150:1151 | SSU/LSU pseudoknot | homologous IL_7A0S_034 IL_46868.2 | |
| IL_9Y79_095 | 1/a/1011:1013, 1/a/1149:1150 | Single bulged U | homologous IL_7A0S_035 IL_97561.7 | |
| IL_9Y79_096 | 1/a/1018:1024, 1/a/1140:1144 | Kink-turn related | homologous IL_7A0S_036 IL_57188.6 | |
| IL_9Y79_097 | 1/a/1024:1030, 1/a/1124:1140 | No text annotation | geometric IL_8B0X_101 IL_50715.4 | |
| IL_9Y79_098 | 1/a/1031:1034, 1/a/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7A0S_038 IL_76400.2 | |
| IL_9Y79_099 | 1/a/1038:1041, 1/a/1114:1117 | Tandem non-canonical cWW pairs | geometric IL_8B0X_103 IL_15225.4 | |
| IL_9Y79_100 | 1/a/1043:1051, 1/a/1108:1112 | Kink-turn | geometric IL_8B0X_104 IL_99692.4 | |
| IL_9Y79_103 | 1/a/1196:1198, 1/a/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_84227.1 | |
| IL_9Y79_104 | 1/a/1202:1206, 1/a/1240:1243 | No text annotation | geometric IL_9DFE_045 IL_68574.5 | |
| IL_9Y79_105 | 1/a/1208:1215, 1/a/1234:1238 | Kink-turn | homologous IL_7A0S_043 IL_90775.3 | |
| IL_9Y79_106 | 1/a/1262:1269, 1/a/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_045 IL_62167.5 | |
| IL_9Y79_107 | 1/a/1310:1313, 1/a/1603:1604 | Major groove platform; stack outside cWW | geometric IL_4WF9_049 IL_74641.4 | |
| IL_9Y79_108 | 1/a/1319:1323, 1/a/1331:1333 | C-loop | homologous IL_7A0S_047 IL_06671.3 | |
| IL_9Y79_109 | 1/a/1351:1353, 1/a/1379:1380 | No text annotation | geometric IL_8GLP_054 IL_15011.5 | |
| IL_9Y79_110 | 1/a/1351:1355, 1/a/1376:1380 | No text annotation | geometric IL_8B0X_111 IL_89021.4 | |
| IL_9Y79_111 | 1/a/1353:1355, 1/a/1376:1379 | No text annotation | ||
| IL_9Y79_112 | 1/a/1357:1361, 1/a/1370:1374 | tSH-tWH-tHS | homologous IL_7A0S_049 IL_05821.3 | |
| IL_9Y79_113 | 1/a/1415:1416, 1/a/1582:1587 | No text annotation | ||
| IL_9Y79_114 | 1/a/1417:1421, 1/a/1577:1581 | UAA/GAN | homologous IL_7A0S_051 IL_08938.3 | |
| IL_9Y79_115 | 1/a/1432:1435, 1/a/1557:1561 | No text annotation | geometric IL_8B0X_115 IL_60418.1 | |
| IL_9Y79_116 | 1/a/1437:1440, 1/a/1551:1555 | tSH-tHW | homologous IL_7A0S_053 IL_74317.1 | |
| IL_9Y79_117 | 1/a/1450:1451, 1/a/1459:1461 | No text annotation | geometric IL_8B0X_117 IL_97561.7 | |
| IL_9Y79_118 | 1/a/1468:1471, 1/a/1520:1524 | No text annotation | geometric IL_8B0X_118 IL_68574.5 | |
| IL_9Y79_119 | 1/a/1474:1478, 1/a/1513:1517 | Double sheared with near cWW | homologous IL_7A0S_056 IL_87767.4 | |
| IL_9Y79_120 | 1/a/1480:1482, 1/a/1507:1511 | No text annotation | ||
| IL_9Y79_121 | 1/a/1489:1491, 1/a/1499:1500 | No text annotation | geometric IL_8B0X_121 IL_14190.4 | |
| IL_9Y79_122 | 1/a/1526:1529, 1/a/1542:1546 | No text annotation | geometric IL_8B0X_122 IL_45790.3 | |
| IL_9Y79_123 | 1/a/1651:1656, 1/a/2004:2006 | No text annotation | homologous IL_7A0S_059 IL_12566.6 | |
| IL_9Y79_124 | 1/a/1663:1665, 1/a/1995:1997 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.3 | |
| IL_9Y79_125 | 1/a/1666:1669, 1/a/1993:1994 | No text annotation | geometric IL_8B0X_125 IL_74641.4 | |
| IL_9Y79_126 | 1/a/1666:1674, 1/a/1990:1994 | No text annotation | geometric IL_8B0X_180 IL_80252.3 | |
| IL_9Y79_127 | 1/a/1669:1674, 1/a/1990:1993 | Intercalated tWH | homologous IL_7A0S_062 IL_28217.3 | |
| IL_9Y79_128 | 1/a/1686:1691, 1/a/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7A0S_063 IL_20700.3 | |
| IL_9Y79_129 | 1/a/1712:1718, 1/a/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_8B0X_128 IL_82100.1 | |
| IL_9Y79_130 | 1/a/1720:1724, 1/a/1736:1740 | No text annotation | geometric IL_8B0X_129 IL_70744.1 | |
| IL_9Y79_131 | 1/a/1770:1771, 1/a/1980:1982 | Single bulged A | homologous IL_7A0S_064 IL_14190.4 | |
| IL_9Y79_132 | 1/a/1798:1804, 1/a/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_9Y79_133 | 1/a/1837:1840, 1/a/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_55206.3 | |
| IL_9Y79_134 | 1/a/1841:1842, 1/a/1898:1901 | Major groove intercalation | homologous IL_7A0S_067 IL_77710.2 | |
| IL_9Y79_135 | 1/a/1846:1849, 1/a/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_7A0S_068 IL_73108.4 | |
| IL_9Y79_136 | 1/a/1851:1860, 1/a/1882:1891 | No text annotation | ||
| IL_9Y79_137 | 1/a/1864:1867, 1/a/1874:1878 | No text annotation | geometric IL_8B0X_136 IL_77691.7 | |
| IL_9Y79_138 | 1/a/1933:1934, 1/a/1964:1967 | Bulged stacked bases | homologous IL_7A0S_071 IL_24886.4 | |
| IL_9Y79_139 | 1/a/2050:2052, 1/a/2617:2618 | Major groove platform | homologous IL_7A0S_073 IL_48076.10 | |
| IL_9Y79_140 | 1/a/2054:2056, 1/a/2612:2615 | No text annotation | ||
| IL_9Y79_141 | 1/a/2070:2071, 1/a/2438:2441 | Minor groove platform | homologous IL_7A0S_076 IL_98469.1 | |
| IL_9Y79_142 | 1/a/2081:2083, 1/a/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_87316.4 | |
| IL_9Y79_143 | 1/a/2085:2087, 1/a/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_71625.5 | |
| IL_9Y79_149 | 1/a/2202:2204, 1/a/2220:2221 | No text annotation | geometric IL_8B0X_146 IL_97561.7 | |
| IL_9Y79_150 | 1/a/2350:2353, 1/a/2364:2367 | Double sheared | homologous IL_7A0S_081 IL_58355.4 | |
| IL_9Y79_151 | 1/a/2401:2403, 1/a/2414:2415 | No text annotation | geometric IL_9H3G_006 IL_97561.7 | |
| IL_9Y79_152 | 1/a/2459:2461, 1/a/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_36931.4 | |
| IL_9Y79_153 | 1/a/2466:2470, 1/a/2480:2484 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.4 | |
| IL_9Y79_154 | 1/a/2510:2512, 1/a/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7A0S_089 IL_30722.1 | |
| IL_9Y79_155 | 1/a/2512:2513, 1/a/2571:2574 | Multiple bulged bases | homologous IL_7A0S_090 IL_44609.4 | |
| IL_9Y79_156 | 1/a/2522:2523, 1/a/2540:2543 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.3 | |
| IL_9Y79_157 | 1/a/2591:2592, 1/a/2601:2603 | No text annotation | geometric IL_9PN5_109 IL_14190.4 | |
| IL_9Y79_158 | 1/a/2636:2640, 1/a/2774:2782 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.4 | |
| IL_9Y79_159 | 1/a/2652:2658, 1/a/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.6 | |
| IL_9Y79_160 | 1/a/2680:2684, 1/a/2725:2727 | C-loop | homologous IL_7A0S_095 IL_63596.14 | |
| IL_9Y79_161 | 1/a/2687:2691, 1/a/2718:2722 | UAA/GAN related, with intercalation | homologous IL_7A0S_096 IL_82016.1 | |
| IL_9Y79_162 | 1/a/2695:2696, 1/a/2711:2714 | Multiple bulged bases | homologous IL_7A0S_097 IL_44609.4 | |
| IL_9Y79_163 | 1/a/2737:2742, 1/a/2762:2767 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_9Y79_164 | 1/a/2806:2811, 1/a/2889:2892 | No text annotation | ||
| IL_9Y79_165 | 1/a/2838:2839, 1/a/2878:2880 | Major groove intercalation | homologous IL_7A0S_099 IL_28408.4 | |
| IL_9Y79_166 | 1/a/2843:2846, 1/a/2870:2874 | No text annotation | geometric IL_8B0X_169 IL_60988.4 | |
| IL_9Y79_167 | 1/a/2847:2852, 1/a/2865:2869 | No text annotation | homologous IL_7A0S_101 IL_48489.3 | |
| IL_9Y79_170 | 1/d/23:28, 1/d/56:60 | No text annotation | geometric IL_8B0X_172 IL_18472.5 | |
| IL_9Y79_171 | 1/d/30:31, 1/d/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.4 | |
| IL_9Y79_172 | 1/d/34:38, 1/d/44:48 | Symmetric double minor groove platform | homologous IL_7A0S_113 IL_58103.14 | |
| IL_9Y79_173 | 1/d/71:79, 1/d/97:105 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_71138.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9Y79_041 | Single stack bend | ||
| IL_9Y79_042 | No text annotation | ||
| IL_9Y79_069 | No text annotation | ||
| IL_9Y79_091 | Single bulged A | ||
| IL_9Y79_101 | No text annotation | ||
| IL_9Y79_102 | No text annotation | ||
| IL_9Y79_144 | Tandem non-canonical cWW pairs | ||
| IL_9Y79_145 | Isolated non-canonical cWW pair | ||
| IL_9Y79_146 | No text annotation | ||
| IL_9Y79_147 | No text annotation | ||
| IL_9Y79_148 | Kink-turn | ||
| IL_9Y79_168 | No text annotation | ||
| IL_9Y79_169 | Major groove intercalation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9Y79_001 | 1/D/46:47, 1/D/361:367, 1/D/393:395 | No text annotation | geometric J3_8B0X_001 J3_58657.3 | |
| J3_9Y79_002 | 1/D/46:52, 1/D/359:367, 1/D/393:395 | No text annotation | homologous J3_6CZR_058 NA | |
| J3_9Y79_003 | 1/D/586:588, 1/D/651:654, 1/D/754:755 | No text annotation | geometric J3_8B0X_002 J3_01633.3 | |
| J3_9Y79_004 | 1/D/586:588, 1/D/651:655, 1/D/751:755 | No text annotation | homologous J3_6CZR_077 NA | |
| J3_9Y79_005 | 1/D/672:677, 1/D/713:725, 1/D/732:734 | No text annotation | ||
| J3_9Y79_006 | 1/D/826:829, 1/D/857:861, 1/D/868:874 | No text annotation | homologous J3_6CZR_018 NA | |
| J3_9Y79_007 | 1/D/936:939, 1/D/1344:1350, 1/D/1372:1379 | No text annotation | homologous J3_6CZR_061 NA | |
| J3_9Y79_008 | 1/D/943:946, 1/D/1235:1237, 1/D/1337:1340 | No text annotation | homologous J3_6CZR_019 NA | |
| J3_9Y79_009 | 1/D/955:962, 1/D/973:984, 1/D/1221:1225 | No text annotation | geometric J3_8B0X_007 J3_88451.3 | |
| J3_9Y79_010 | 1/D/990:993, 1/D/1045:1047, 1/D/1210:1215 | No text annotation | geometric J3_8B0X_008 J3_84394.1 | |
| J3_9Y79_011 | 1/D/990:997, 1/D/1044:1047, 1/D/1210:1215 | No text annotation | homologous J3_6CZR_063 NA | |
| J3_9Y79_012 | 1/D/1063:1068, 1/D/1107:1113, 1/D/1187:1193 | No text annotation | homologous J3_6CZR_023 NA | |
| J3_9Y79_013 | 1/D/1073:1074, 1/D/1083:1087, 1/D/1098:1102 | No text annotation | geometric J3_9PN5_040 J3_76043.6 | |
| J3_9Y79_014 | 1/D/1116:1118, 1/D/1155:1158, 1/D/1181:1184 | No text annotation | geometric J3_8B0X_012 J3_82365.7 | |
| J3_9Y79_015 | 1/D/1116:1118, 1/D/1155:1161, 1/D/1175:1184 | No text annotation | homologous J3_6CZR_025 NA | |
| J3_9Y79_016 | 1/D/1237:1241, 1/D/1296:1303, 1/D/1334:1337 | No text annotation | homologous J3_6CZR_026 NA | |
| J3_9Y79_017 | 1/a/30:31, 1/a/474:481, 1/a/509:510 | No text annotation | geometric J3_8B0X_014 J3_68715.3 | |
| J3_9Y79_018 | 1/a/30:31, 1/a/474:484, 1/a/496:510 | No text annotation | homologous J3_7A0S_015 J3_17917.3 | |
| J3_9Y79_019 | 1/a/32:35, 1/a/445:461, 1/a/468:473 | No text annotation | homologous J3_7A0S_016 J3_07616.3 | |
| J3_9Y79_020 | 1/a/56:57, 1/a/70:76, 1/a/110:114 | No text annotation | homologous J3_7A0S_002 J3_01004.3 | |
| J3_9Y79_021 | 1/a/683:689, 1/a/773:775, 1/a/791:794 | No text annotation | homologous J3_7A0S_004 J3_46658.3 | |
| J3_9Y79_022 | 1/a/698:700, 1/a/732:736, 1/a/760:763 | No text annotation | homologous J3_7A0S_005 J3_69816.3 | |
| J3_9Y79_024 | 1/a/1298:1303, 1/a/1625:1627, 1/a/1639:1642 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_9Y79_025 | 1/a/1306:1309, 1/a/1605:1611, 1/a/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_9Y79_026 | 1/a/1344:1349, 1/a/1382:1385, 1/a/1402:1403 | No text annotation | ||
| J3_9Y79_027 | 1/a/1424:1429, 1/a/1564:1565, 1/a/1568:1574 | No text annotation | homologous J3_7A0S_019 J3_34864.3 | |
| J3_9Y79_028 | 1/a/2091:2093, 1/a/2196:2200, 1/a/2223:2228 | No text annotation | homologous J3_7A0S_009 J3_17460.1 | |
| J3_9Y79_029 | 1/a/2282:2284, 1/a/2384:2395, 1/a/2421:2427 | No text annotation | homologous J3_7A0S_020 J3_04772.3 | |
| J3_9Y79_030 | 1/a/2295:2299, 1/a/2317:2323, 1/a/2332:2337 | No text annotation | ||
| J3_9Y79_031 | 1/a/2517:2520, 1/a/2545:2547, 1/a/2561:2567 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J3_9Y79_032 | 1/a/2789:2791, 1/a/2805:2806, 1/a/2892:2894 | No text annotation | ||
| J3_9Y79_033 | 1/a/2812:2815, 1/a/2831:2836, 1/a/2882:2888 | No text annotation | ||
| J3_9Y79_034 | 1/d/10:16, 1/d/68:70, 1/d/106:110 | No text annotation | ||
| J4_9Y79_001 | 1/A/7:10, 1/A/25:27, 1/A/43:49, 1/A/65:66 | tRNA junction | homologous J4_4V9Q_031 J4_95067.2 | |
| J4_9Y79_002 | 1/B/7:10, 1/B/25:27, 1/B/43:49, 1/B/65:66 | tRNA junction | homologous J4_1IL2_001 J4_95067.2 | |
| J4_9Y79_003 | 1/D/115:122, 1/D/239:240, 1/D/286:289, 1/D/311:312 | No text annotation | homologous J4_6CZR_027 NA | |
| J4_9Y79_004 | 1/D/142:144, 1/D/178:184, 1/D/193:198, 1/D/219:221 | No text annotation | ||
| J4_9Y79_005 | 1/D/575:577, 1/D/764:769, 1/D/810:821, 1/D/879:880 | No text annotation | homologous J4_6CZR_013 NA | |
| J4_9Y79_006 | 1/a/268:269, 1/a/370:375, 1/a/399:406, 1/a/421:424 | No text annotation | homologous J4_7A0S_001 J4_94698.3 | |
| J4_9Y79_007 | 1/a/297:301, 1/a/316:319, 1/a/323:325, 1/a/337:341 | No text annotation | homologous J4_7A0S_002 J4_16174.1 | |
| J4_9Y79_008 | 1/a/601:604, 1/a/624:628, 1/a/635:638, 1/a/650:656 | No text annotation | ||
| J4_9Y79_009 | 1/a/1270:1276, 1/a/1294:1295, 1/a/1645:1648, 1/a/2009:2010 | No text annotation | homologous J4_7A0S_004 J4_19484.1 | |
| J4_9Y79_010 | 1/a/1310:1314, 1/a/1338:1343, 1/a/1404:1405, 1/a/1597:1604 | No text annotation | ||
| J4_9Y79_011 | 1/a/1313:1314, 1/a/1338:1343, 1/a/1404:1405, 1/a/1597:1603 | No text annotation | homologous J4_7A0S_006 J4_48150.2 | |
| J4_9Y79_012 | 1/a/1444:1445, 1/a/1466:1467, 1/a/1525:1526, 1/a/1546:1547 | No text annotation | ||
| J4_9Y79_013 | 1/a/1772:1776, 1/a/1788:1792, 1/a/1827:1830, 1/a/1975:1979 | No text annotation | homologous J4_7A0S_008 J4_61477.6 | |
| J4_9Y79_014 | 1/a/2285:2289, 1/a/2343:2347, 1/a/2370:2372, 1/a/2381:2383 | No text annotation | homologous J4_7A0S_009 J4_98139.1 | |
| J4_9Y79_015 | 1/a/2643:2646, 1/a/2674:2676, 1/a/2731:2735, 1/a/2769:2771 | No text annotation | ||
| J5_9Y79_001 | 1/D/36:39, 1/D/403:406, 1/D/436:440, 1/D/497:500, 1/D/545:548 | No text annotation | ||
| J5_9Y79_002 | 1/D/36:39, 1/D/403:406, 1/D/436:442, 1/D/492:500, 1/D/545:548 | No text annotation | ||
| J5_9Y79_003 | 1/D/58:61, 1/D/106:113, 1/D/314:316, 1/D/337:339, 1/D/350:354 | No text annotation | homologous J5_6CZR_021 NA | |
| J5_9Y79_004 | 1/a/47:54, 1/a/116:121, 1/a/130:131, 1/a/148:150, 1/a/176:178 | No text annotation | ||
| J5_9Y79_005 | 1/a/531:533, 1/a/560:564, 1/a/577:579, 1/a/1261:1262, 1/a/2017:2018 | No text annotation | homologous J5_7A0S_003 J5_43153.6 | |
| J5_9Y79_006 | 1/a/584:589, 1/a/668:671, 1/a/809:812, 1/a/1195:1196, 1/a/1250:1256 | No text annotation | homologous J5_7A0S_004 J5_74302.6 | |
| J5_9Y79_007 | 1/a/1674:1682, 1/a/1706:1707, 1/a/1751:1752, 1/a/1756:1764, 1/a/1988:1990 | No text annotation | homologous J5_7A0S_005 J5_99177.3 | |
| J6_9Y79_001 | 1/a/45:46, 1/a/179:183, 1/a/214:224, 1/a/231:235, 1/a/262:266, 1/a/426:433 | No text annotation | ||
| J7_9Y79_001 | 1/a/8:15, 1/a/525:531, 1/a/2018:2023, 1/a/2040:2043, 1/a/2625:2630, 1/a/2788:2789, 1/a/2894:2895 | No text annotation | ||
| J7_9Y79_002 | 1/a/817:822, 1/a/835:838, 1/a/940:946, 1/a/971:976, 1/a/987:991, 1/a/1163:1164, 1/a/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9Y79_023 | No text annotation |
Coloring options: