HL_9Y79_012

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9Y79|1|D|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_012 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.2975

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9Y79|1|D|G|259
9Y79|1|D|G|260
9Y79|1|D|U|261
9Y79|1|D|A|262
9Y79|1|D|A|263
9Y79|1|D|C|264
9Y79|1|D|G|265
9Y79|1|D|G|266
9Y79|1|D|C|267

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein bS20

Chain V

Small ribosomal subunit protein uS17