HL_9Y79_014

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_014 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1599

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9Y79|1|D|A|320
9Y79|1|D|A|321
9Y79|1|D|C|322
9Y79|1|D|U|323
9Y79|1|D|G|324
9Y79|1|D|A|325
9Y79|1|D|G|326
9Y79|1|D|A|327
9Y79|1|D|C|328
9Y79|1|D|A|329
9Y79|1|D|C|330
9Y79|1|D|G|331
9Y79|1|D|G|332
9Y79|1|D|U|333

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein bS20

Chain U

Small ribosomal subunit protein bS16