HL_9Y79_018

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9Y79|1|D|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_018 not in the Motif Atlas

Geometric match to HL_9H3G_100

Geometric discrepancy: 0.289

The information below is about HL_9H3G_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9Y79|1|D|G|462
9Y79|1|D|U|463
9Y79|1|D|U|464
9Y79|1|D|A|465
9Y79|1|D|A|466
9Y79|1|D|U|467
9Y79|1|D|A|468
9Y79|1|D|C|469
9Y79|1|D|C|470

Current chains

Chain D

16S rRNA

Nearby chains