HL_9Y79_029

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9Y79|1|D|C|1136, 9Y79|1|D|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_029 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.3111

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y79|1|D|G|1134
9Y79|1|D|U|1135
9Y79|1|D|C|1136
9Y79|1|D|C|1137
9Y79|1|D|G|1138
9Y79|1|D|G|1139
9Y79|1|D|C|1140

Current chains

Chain D

16S rRNA

Nearby chains

Chain O

Small ribosomal subunit protein uS9