HL_9Y79_030

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

9Y79|1|D|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_030 not in the Motif Atlas

Homologous match to HL_6CZR_098

Geometric discrepancy: 0.3915

The information below is about HL_6CZR_098

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9Y79|1|D|U|1165
9Y79|1|D|G|1166
9Y79|1|D|A|1167
9Y79|1|D|U|1168
9Y79|1|D|A|1169
9Y79|1|D|A|1170
9Y79|1|D|A|1171

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein bS21

Chain G

30S ribosomal protein S2

Chain H

Small ribosomal subunit protein bS1