HL_9Y79_080

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

9Y79|1|a|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_080 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.2536

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

9Y79|1|a|C|2143
9Y79|1|a|G|2144
9Y79|1|a|C|2145
9Y79|1|a|C|2146
9Y79|1|a|A|2147
9Y79|1|a|G|2148

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA