HL_9Y79_081

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

9Y79|1|a|A|2211, 9Y79|1|a|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_081 not in the Motif Atlas

Geometric match to HL_8B0X_079

Geometric discrepancy: 0.14

The information below is about HL_8B0X_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33632.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

9Y79|1|a|G|2209
9Y79|1|a|U|2210
9Y79|1|a|A|2211
9Y79|1|a|A|2212
9Y79|1|a|U|2213
9Y79|1|a|C|2214
9Y79|1|a|C|2215

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2