HL_9Y79_093

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9Y79|1|a|G|2751, 9Y79|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_093 not in the Motif Atlas

Geometric match to HL_4WF9_062

Geometric discrepancy: 0.1768

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.4

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

9Y79|1|a|C|2745
9Y79|1|a|U|2746
9Y79|1|a|G|2747
9Y79|1|a|A|2748
9Y79|1|a|A|2749
9Y79|1|a|A|2750
9Y79|1|a|G|2751
9Y79|1|a|C|2752
9Y79|1|a|A|2753
9Y79|1|a|U|2754
9Y79|1|a|C|2755
9Y79|1|a|U|2756
9Y79|1|a|A|2757
9Y79|1|a|A|2758
9Y79|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein uL6

Chain q

50S ribosomal protein L36

Chain s

Large ribosomal subunit protein uL13