HL_9YDB_011

3D structure

PDB id

9YDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDB_011 not in the Motif Atlas

Homologous match to HL_9SUM_012

Geometric discrepancy: 0.0994

The information below is about HL_9SUM_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9YDB|1|A|U|382
9YDB|1|A|G|383
9YDB|1|A|A|384
9YDB|1|A|A|385
9YDB|1|A|A|386
9YDB|1|A|A|387

Current chains

Chain A

25S RNA

Nearby chains

Chain LR

60S ribosomal protein L17-A

Chain z

Cytoplasmic 60S subunit biogenesis factor REH1