RNA 3D Hub //

9YDB Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9YDB_0011/A/38:45No text annotation
HL_9YDB_0021/A/69:74No text annotation
HL_9YDB_0031/A/90:96No text annotation
HL_9YDB_0041/A/132:136No text annotation
HL_9YDB_0051/A/194:201No text annotation
HL_9YDB_0061/A/208:212No text annotation
HL_9YDB_0071/A/216:224No text annotation
HL_9YDB_0081/A/278:287No text annotation
HL_9YDB_0091/A/303:312No text annotation
HL_9YDB_0101/A/357:362No text annotation
HL_9YDB_0111/A/382:387No text annotation
HL_9YDB_0131/A/599:604No text annotation
HL_9YDB_0141/A/640:649No text annotation
HL_9YDB_0151/A/686:694No text annotation
HL_9YDB_0161/A/707:712No text annotation
HL_9YDB_0171/A/732:737No text annotation
HL_9YDB_0181/A/763:768No text annotation
HL_9YDB_0191/A/844:849No text annotation
HL_9YDB_0201/A/876:885No text annotation
HL_9YDB_0211/A/910:918No text annotation
HL_9YDB_0221/A/958:963No text annotation
HL_9YDB_0231/A/1076:1083No text annotation
HL_9YDB_0241/A/1126:1132No text annotation
HL_9YDB_0251/A/1148:1155No text annotation
HL_9YDB_0261/A/1403:1408No text annotation
HL_9YDB_0271/A/1462:1470No text annotation
HL_9YDB_0281/A/1506:1512No text annotation
HL_9YDB_0291/A/1544:1549No text annotation
HL_9YDB_0301/A/1599:1608No text annotation
HL_9YDB_0311/A/1634:1639No text annotation
HL_9YDB_0321/A/1680:1688No text annotation
HL_9YDB_0331/A/1719:1725No text annotation
HL_9YDB_0341/A/1792:1796No text annotation
HL_9YDB_0351/A/1844:1851No text annotation
HL_9YDB_0361/A/1862:1868No text annotation
HL_9YDB_0371/A/1923:1928No text annotation
HL_9YDB_0381/A/2110:2114No text annotation
HL_9YDB_0391/A/2135:2145No text annotation
HL_9YDB_0401/A/2164:2170No text annotation
HL_9YDB_0411/A/2220:2225No text annotation
HL_9YDB_0421/A/2254:2262No text annotation
HL_9YDB_0431/A/2292:2300No text annotation
HL_9YDB_0441/A/2369:2378No text annotation
HL_9YDB_0461/A/2616:2624No text annotation
HL_9YDB_0471/A/2633:2645No text annotation
HL_9YDB_0481/A/2673:2681No text annotation
HL_9YDB_0491/A/2693:2700No text annotation
HL_9YDB_0501/A/2724:2732No text annotation
HL_9YDB_0511/A/2744:2749No text annotation
HL_9YDB_0521/A/2776:2784No text annotation
HL_9YDB_0531/A/2840:2848No text annotation
HL_9YDB_0541/A/2897:2904No text annotation
HL_9YDB_0551/A/2920:2926No text annotation
HL_9YDB_0561/A/2963:2968No text annotation
HL_9YDB_0571/A/3025:3030No text annotation
HL_9YDB_0581/A/3068:3073No text annotation
HL_9YDB_0591/A/3110:3124No text annotation
HL_9YDB_0601/A/3194:3197No text annotation
HL_9YDB_0611/A/3240:3247No text annotation
HL_9YDB_0621/A/3303:3311No text annotation
HL_9YDB_0631/B/32:45No text annotation
HL_9YDB_0641/B/36:41No text annotation
HL_9YDB_0651/B/88:93No text annotation
HL_9YDB_0661/C/47:56No text annotation
HL_9YDB_0671/C/69:89No text annotation
HL_9YDB_0681/C/108:114No text annotation
HL_9YDB_0691/C/124:129No text annotation

Problematic loops

#loop idProblemSequence
HL_9YDB_012No text annotation
HL_9YDB_045No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9YDB_0011/A/7:8,
1/C/150:152		No text annotation
IL_9YDB_0021/A/13:15,
1/C/144:145		No text annotation
IL_9YDB_0031/A/27:28,
1/A/56:58		No text annotation
IL_9YDB_0041/A/31:38,
1/A/45:53		No text annotation
IL_9YDB_0051/A/82:89,
1/A/97:103		No text annotation
IL_9YDB_0061/A/123:124,
1/A/144:149		No text annotation
IL_9YDB_0071/A/125:127,
1/A/141:143		No text annotation
IL_9YDB_0081/A/163:165,
1/A/257:258		No text annotation
IL_9YDB_0101/A/189:191,
1/A/204:205		No text annotation
IL_9YDB_0111/A/337:339,
1/C/25:26		No text annotation
IL_9YDB_0121/A/376:379,
1/A/390:403		No text annotation
IL_9YDB_0131/A/404:410,
1/C/13:19		No text annotation
IL_9YDB_0141/A/429:431,
1/A/628:630		No text annotation
IL_9YDB_0151/A/512:513,
1/A/577:579		No text annotation
IL_9YDB_0161/A/517:525,
1/A/567:573		No text annotation
IL_9YDB_0171/A/531:538,
1/A/553:561		No text annotation
IL_9YDB_0181/A/668:670,
1/A/792:794		No text annotation
IL_9YDB_0191/A/680:684,
1/A/696:700		No text annotation
IL_9YDB_0201/A/725:728,
1/A/741:745		No text annotation
IL_9YDB_0211/A/752:753,
1/A/779:781		No text annotation
IL_9YDB_0221/A/755:756,
1/A/775:777		No text annotation
IL_9YDB_0231/A/758:763,
1/A/768:773		No text annotation
IL_9YDB_0241/A/803:805,
1/A/938:940		No text annotation
IL_9YDB_0251/A/805:809,
1/A/931:938		No text annotation
IL_9YDB_0261/A/833:834,
1/A/859:861		No text annotation
IL_9YDB_0271/A/834:838,
1/A/855:859		No text annotation
IL_9YDB_0281/A/869:872,
1/A/888:890		No text annotation
IL_9YDB_0291/A/873:875,
1/A/886:887		No text annotation
IL_9YDB_0301/A/907:909,
1/A/919:923		No text annotation
IL_9YDB_0311/A/954:956,
1/A/965:967		No text annotation
IL_9YDB_0321/A/969:970,
1/A/1111:1113		No text annotation
IL_9YDB_0331/A/977:982,
1/A/1101:1104		No text annotation
IL_9YDB_0341/A/983:985,
1/A/1099:1100		No text annotation
IL_9YDB_0351/A/991:997,
1/A/1052:1058		No text annotation
IL_9YDB_0361/A/997:998,
1/A/1050:1052		No text annotation
IL_9YDB_0371/A/999:1004,
1/A/1046:1049		No text annotation
IL_9YDB_0381/A/1006:1009,
1/A/1041:1044		No text annotation
IL_9YDB_0391/A/1009:1011,
1/A/1039:1041		No text annotation
IL_9YDB_0401/A/1069:1071,
1/A/1087:1089		No text annotation
IL_9YDB_0411/A/1074:1076,
1/A/1083:1084		No text annotation
IL_9YDB_0421/A/1120:1122,
1/A/1136:1138		No text annotation
IL_9YDB_0441/A/1167:1171,
1/A/1328:1332		No text annotation
IL_9YDB_0451/A/1173:1180,
1/A/1325:1326		No text annotation
IL_9YDB_0461/A/1180:1182,
1/A/1324:1325		No text annotation
IL_9YDB_0471/A/1187:1194,
1/A/1314:1319		No text annotation
IL_9YDB_0481/A/1194:1205,
1/A/1299:1314		No text annotation
IL_9YDB_0491/A/1207:1209,
1/A/1296:1297		No text annotation
IL_9YDB_0501/A/1218:1226,
1/A/1283:1287		No text annotation
IL_9YDB_0511/A/1376:1378,
1/A/1428:1431		No text annotation
IL_9YDB_0521/A/1385:1387,
1/A/1420:1421		No text annotation
IL_9YDB_0531/A/1388:1395,
1/A/1415:1419		No text annotation
IL_9YDB_0541/A/1398:1400,
1/A/1411:1412		No text annotation
IL_9YDB_0551/A/1444:1450,
1/A/2354:2359		No text annotation
IL_9YDB_0561/A/1501:1505,
1/A/1513:1515		No text annotation
IL_9YDB_0571/A/1532:1536,
1/A/1585:1590		No text annotation
IL_9YDB_0581/A/1563:1566,
1/A/1572:1576		No text annotation
IL_9YDB_0591/A/1618:1621,
1/A/1824:1826		No text annotation
IL_9YDB_0601/A/1623:1624,
1/A/1820:1822		No text annotation
IL_9YDB_0611/A/1645:1649,
1/A/1806:1810		No text annotation
IL_9YDB_0621/A/1661:1663,
1/A/1786:1788		No text annotation
IL_9YDB_0631/A/1669:1670,
1/A/1778:1780		No text annotation
IL_9YDB_0641/A/1670:1671,
1/A/1776:1778		No text annotation
IL_9YDB_0651/A/1694:1698,
1/A/1747:1752		No text annotation
IL_9YDB_0661/A/1702:1707,
1/A/1737:1743		No text annotation
IL_9YDB_0671/A/1711:1717,
1/A/1727:1733		No text annotation
IL_9YDB_0681/A/1883:1889,
1/A/2346:2349		No text annotation
IL_9YDB_0691/A/1895:1897,
1/A/2338:2340		No text annotation
IL_9YDB_0701/A/1898:1901,
1/A/2336:2337		No text annotation
IL_9YDB_0711/A/1898:1906,
1/A/2333:2337		No text annotation
IL_9YDB_0721/A/1901:1906,
1/A/2333:2336		No text annotation
IL_9YDB_0731/A/1918:1923,
1/A/1928:1934		No text annotation
IL_9YDB_0741/A/1940:1942,
1/A/2106:2108		No text annotation
IL_9YDB_0751/A/1947:1948,
1/A/2098:2101		No text annotation
IL_9YDB_0761/A/2128:2129,
1/A/2323:2325		No text annotation
IL_9YDB_0771/A/2156:2161,
1/A/2173:2180		No text annotation
IL_9YDB_0781/A/2196:2199,
1/A/2245:2246		No text annotation
IL_9YDB_0791/A/2200:2201,
1/A/2241:2244		No text annotation
IL_9YDB_0801/A/2204:2210,
1/A/2235:2238		No text annotation
IL_9YDB_0811/A/2211:2217,
1/A/2228:2234		No text annotation
IL_9YDB_0821/A/2276:2277,
1/A/2307:2310		No text annotation
IL_9YDB_0831/A/2277:2288,
1/A/2304:2307		No text annotation
IL_9YDB_0841/A/2391:2394,
1/A/2986:2988		No text annotation
IL_9YDB_0851/A/2396:2398,
1/A/2981:2984		No text annotation
IL_9YDB_0861/A/2409:2411,
1/A/2811:2812		No text annotation
IL_9YDB_0871/A/2412:2413,
1/A/2807:2810		No text annotation
IL_9YDB_0881/A/2423:2425,
1/A/2604:2607		No text annotation
IL_9YDB_0891/A/2520:2526,
1/A/2584:2587		No text annotation
IL_9YDB_0901/A/2614:2615,
1/A/2625:2627		No text annotation
IL_9YDB_0911/A/2666:2668,
1/A/2686:2690		No text annotation
IL_9YDB_0921/A/2718:2721,
1/A/2735:2738		No text annotation
IL_9YDB_0931/A/2770:2773,
1/A/2787:2788		No text annotation
IL_9YDB_0941/A/2823:2824,
1/A/2865:2867		No text annotation
IL_9YDB_0951/A/2824:2826,
1/A/2863:2865		No text annotation
IL_9YDB_0961/A/2826:2828,
1/A/2862:2863		No text annotation
IL_9YDB_0971/A/2828:2830,
1/A/2858:2862		No text annotation
IL_9YDB_0981/A/2835:2839,
1/A/2849:2853		No text annotation
IL_9YDB_0991/A/2876:2877,
1/A/2949:2951		No text annotation
IL_9YDB_1001/A/2879:2881,
1/A/2943:2947		No text annotation
IL_9YDB_1011/A/2881:2882,
1/A/2940:2943		No text annotation
IL_9YDB_1021/A/2889:2891,
1/A/2912:2914		No text annotation
IL_9YDB_1031/A/2889:2892,
1/A/2909:2914		No text annotation
IL_9YDB_1041/A/2891:2892,
1/A/2909:2912		No text annotation
IL_9YDB_1051/A/2918:2920,
1/A/2926:2928		No text annotation
IL_9YDB_1061/A/2960:2961,
1/A/2970:2972		No text annotation
IL_9YDB_1071/A/3004:3007,
1/A/3139:3144		No text annotation
IL_9YDB_1081/A/3012:3014,
1/A/3040:3042		No text annotation
IL_9YDB_1091/A/3018:3025,
1/A/3030:3036		No text annotation
IL_9YDB_1101/A/3047:3051,
1/A/3091:3094		No text annotation
IL_9YDB_1111/A/3054:3059,
1/A/3084:3088		No text annotation
IL_9YDB_1121/A/3063:3064,
1/A/3077:3080		No text annotation
IL_9YDB_1131/A/3103:3107,
1/A/3127:3131		No text annotation
IL_9YDB_1141/A/3164:3166,
1/A/3284:3286		No text annotation
IL_9YDB_1151/A/3168:3170,
1/A/3280:3282		No text annotation
IL_9YDB_1161/A/3177:3179,
1/A/3210:3211		No text annotation
IL_9YDB_1171/A/3179:3188,
1/A/3204:3210		No text annotation
IL_9YDB_1181/A/3193:3194,
1/A/3197:3199		No text annotation
IL_9YDB_1191/A/3225:3229,
1/A/3258:3260		No text annotation
IL_9YDB_1201/A/3233:3235,
1/A/3252:3254		No text annotation
IL_9YDB_1211/A/3235:3238,
1/A/3249:3252		No text annotation
IL_9YDB_1221/A/3300:3303,
1/A/3311:3314		No text annotation
IL_9YDB_1231/A/3318:3320,
1/A/3387:3388		No text annotation
IL_9YDB_1241/A/3324:3325,
1/A/3381:3383		No text annotation
IL_9YDB_1251/A/3328:3330,
1/A/3373:3378		No text annotation
IL_9YDB_1261/A/3332:3337,
1/A/3367:3371		No text annotation
IL_9YDB_1271/A/3340:3342,
1/A/3363:3364		No text annotation
IL_9YDB_1281/A/3342:3345,
1/A/3360:3363		No text annotation
IL_9YDB_1291/B/15:16,
1/B/63:65		No text annotation
IL_9YDB_1301/B/21:27,
1/B/53:58		No text annotation
IL_9YDB_1311/B/28:29,
1/B/49:52		No text annotation
IL_9YDB_1321/B/29:30,
1/B/47:49		No text annotation
IL_9YDB_1331/B/32:36,
1/B/41:45		No text annotation
IL_9YDB_1341/B/72:80,
1/B/100:106		No text annotation
IL_9YDB_1351/B/84:87,
1/B/94:96		No text annotation
IL_9YDB_1361/C/64:66,
1/C/93:96		No text annotation
IL_9YDB_1371/C/68:69,
1/C/89:91		No text annotation

Problematic loops

#loop idProblemSequence
IL_9YDB_009No text annotation
IL_9YDB_043No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9YDB_0011/A/113:123,
1/A/149:158,
1/A/263:267		No text annotation
J3_9YDB_0021/A/113:124,
1/A/144:158,
1/A/263:267		No text annotation
J3_9YDB_0031/A/185:189,
1/A/205:214,
1/A/226:231		No text annotation
J3_9YDB_0041/A/340:356,
1/A/363:368,
1/C/21:24		No text annotation
J3_9YDB_0051/A/369:376,
1/A/403:404,
1/C/19:20		No text annotation
J3_9YDB_0061/A/369:379,
1/A/390:404,
1/C/19:20		No text annotation
J3_9YDB_0071/A/502:503,
1/A/588:597,
1/A/606:611		No text annotation
J3_9YDB_0081/A/814:820,
1/A/905:907,
1/A/923:926		No text annotation
J3_9YDB_0091/A/828:831,
1/A/863:867,
1/A/892:897		No text annotation
J3_9YDB_0101/A/986:987,
1/A/1062:1066,
1/A/1092:1098		No text annotation
J3_9YDB_0111/A/1479:1485,
1/A/1857:1859,
1/A/1871:1874		No text annotation
J3_9YDB_0121/A/1488:1491,
1/A/1837:1843,
1/A/1852:1854		No text annotation
J3_9YDB_0131/A/1526:1531,
1/A/1591:1595,
1/A/1612:1613		No text annotation
J3_9YDB_0141/A/1537:1542,
1/A/1551:1560,
1/A/1579:1584		No text annotation
J3_9YDB_0151/A/1631:1632,
1/A/1641:1645,
1/A/1810:1811		No text annotation
J3_9YDB_0161/A/1654:1658,
1/A/1791:1792,
1/A/1796:1801		No text annotation
J3_9YDB_0171/A/2432:2435,
1/A/2512:2517,
1/A/2590:2597		No text annotation
J3_9YDB_0181/A/2529:2532,
1/A/2547:2563,
1/A/2578:2581		No text annotation
J3_9YDB_0191/A/2651:2653,
1/A/2754:2765,
1/A/2793:2798		No text annotation
J3_9YDB_0201/A/2664:2666,
1/A/2690:2692,
1/A/2701:2706		No text annotation
J3_9YDB_0211/A/2886:2889,
1/A/2914:2916,
1/A/2930:2936		No text annotation
J3_9YDB_0221/A/3171:3176,
1/A/3212:3220,
1/A/3265:3279		No text annotation
J3_9YDB_0231/A/3298:3300,
1/A/3314:3318,
1/A/3388:3390		No text annotation
J3_9YDB_0241/B/9:14,
1/B/66:67,
1/B/111:112		No text annotation
J3_9YDB_0251/C/44:45,
1/C/58:64,
1/C/96:100		No text annotation
J4_9YDB_0011/A/112:113,
1/A/267:272,
1/A/293:299,
1/A/316:319		No text annotation
J4_9YDB_0021/A/185:189,
1/A/205:208,
1/A/212:214,
1/A/226:231		No text annotation
J4_9YDB_0031/A/1451:1457,
1/A/1475:1476,
1/A/1877:1880,
1/A/2352:2353		No text annotation
J4_9YDB_0041/A/1492:1496,
1/A/1520:1525,
1/A/1614:1615,
1/A/1829:1836		No text annotation
J4_9YDB_0051/A/1674:1675,
1/A/1693:1694,
1/A/1752:1753,
1/A/1772:1773		No text annotation
J4_9YDB_0061/A/2130:2134,
1/A/2146:2150,
1/A/2186:2190,
1/A/2317:2322		No text annotation
J4_9YDB_0071/A/2192:2194,
1/A/2248:2249,
1/A/2267:2276,
1/A/2310:2315		No text annotation
J4_9YDB_0081/A/2654:2658,
1/A/2712:2716,
1/A/2740:2742,
1/A/2751:2753		No text annotation
J4_9YDB_0091/A/3010:3012,
1/A/3042:3043,
1/A/3098:3100,
1/A/3134:3136		No text annotation
J5_9YDB_0011/A/20:22,
1/C/35:42,
1/C/102:107,
1/C/115:116,
1/C/137:139		No text annotation
J5_9YDB_0021/A/658:663,
1/A/799:802,
1/A/941:944,
1/A/1375:1376,
1/A/1431:1437		No text annotation
J5_9YDB_0031/A/675:678,
1/A/702:706,
1/A/713:721,
1/A/749:751,
1/A/782:787		No text annotation
J5_9YDB_0041/A/1906:1914,
1/A/1938:1939,
1/A/2109:2110,
1/A/2114:2122,
1/A/2331:2333		No text annotation
J5_9YDB_0051/A/2399:2406,
1/A/2815:2823,
1/A/2867:2876,
1/A/2951:2957,
1/A/2975:2980		No text annotation
J5_9YDB_0061/A/2416:2419,
1/A/2611:2614,
1/A/2627:2628,
1/A/2650:2651,
1/A/2798:2804		No text annotation
J6_9YDB_0011/A/22:27,
1/A/58:68,
1/A/75:79,
1/A/106:110,
1/A/321:331,
1/C/32:35		No text annotation
J6_9YDB_0021/A/2416:2419,
1/A/2611:2614,
1/A/2627:2628,
1/A/2650:2653,
1/A/2754:2765,
1/A/2793:2804		No text annotation
J7_9YDB_0011/A/949:954,
1/A/967:968,
1/A/1114:1117,
1/A/1141:1146,
1/A/1157:1161,
1/A/1338:1339,
1/A/1365:1370		No text annotation

Problematic loops

No problematic loops


Coloring options:
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