HL_9YDB_020
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 9YDB|1|A|U|879, 9YDB|1|A|A|883, 9YDB|1|A|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|A|876
9YDB|1|A|C|877
9YDB|1|A|G|878
9YDB|1|A|U|879
9YDB|1|A|G|880
9YDB|1|A|C|881
9YDB|1|A|A|882
9YDB|1|A|A|883
9YDB|1|A|A|884
9YDB|1|A|U|885
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LE
- 60S ribosomal protein L3
- Chain LR
- 60S ribosomal protein L17-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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