HL_9YDB_022

3D structure

PDB id

9YDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9YDB|1|A|C|959, 9YDB|1|A|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDB_022 not in the Motif Atlas

Homologous match to HL_9SUM_023

Geometric discrepancy: 0.1709

The information below is about HL_9SUM_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.4

Basepair signature

cWW-F-F

Number of instances in this motif group

12

Unit IDs

9YDB|1|A|C|958
9YDB|1|A|C|959
9YDB|1|A|U|960
9YDB|1|A|C|961
9YDB|1|A|A|962
9YDB|1|A|G|963

Current chains

Chain A

25S RNA

Nearby chains

Chain Lc

60S ribosomal protein L28

Chain Ld

60S ribosomal protein L29

Chain Lq

60S ribosomal protein L42-A