HL_9YDB_037

3D structure

PDB id

9YDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9YDB|1|A|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDB_037 not in the Motif Atlas

Homologous match to HL_9PN5_042

Geometric discrepancy: 0.0655

The information below is about HL_9PN5_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9YDB|1|A|C|1923
9YDB|1|A|U|1924
9YDB|1|A|U|1925
9YDB|1|A|C|1926
9YDB|1|A|G|1927
9YDB|1|A|G|1928

Current chains

Chain A

25S RNA

Nearby chains

Chain Lr

60S ribosomal protein L43-A

Chain W

Large subunit GTPase 1