HL_9YDB_039
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- UCUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9YDB|1|A|A|2138, 9YDB|1|A|A|2139, 9YDB|1|A|U|2140, 9YDB|1|A|A|2144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDB_039 not in the Motif Atlas
- Homologous match to HL_9SUM_041
- Geometric discrepancy: 0.0796
- The information below is about HL_9SUM_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.4
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 11
Unit IDs
9YDB|1|A|U|2135
9YDB|1|A|C|2136
9YDB|1|A|U|2137
9YDB|1|A|A|2138
9YDB|1|A|A|2139
9YDB|1|A|U|2140
9YDB|1|A|U|2141
9YDB|1|A|A|2142
9YDB|1|A|A|2143
9YDB|1|A|A|2144
9YDB|1|A|A|2145
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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