HL_9YDB_047
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 9YDB|1|A|A|2637, 9YDB|1|A|C|2644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|U|2633
9YDB|1|A|U|2634
9YDB|1|A|A|2635
9YDB|1|A|A|2636
9YDB|1|A|A|2637
9YDB|1|A|C|2638
9YDB|1|A|G|2639
9YDB|1|A|A|2640
9YDB|1|A|U|2641
9YDB|1|A|A|2642
9YDB|1|A|A|2643
9YDB|1|A|C|2644
9YDB|1|A|G|2645
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LV
- 60S ribosomal protein L21-A
- Chain Ld
- 60S ribosomal protein L29
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