HL_9YDB_049
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CAAAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDB_049 not in the Motif Atlas
- Homologous match to HL_8GLP_062
- Geometric discrepancy: 0.0745
- The information below is about HL_8GLP_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.5
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 33
Unit IDs
9YDB|1|A|C|2693
9YDB|1|A|A|2694
9YDB|1|A|A|2695
9YDB|1|A|A|2696
9YDB|1|A|A|2697
9YDB|1|A|G|2698
9YDB|1|A|G|2699
9YDB|1|A|G|2700
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LV
- 60S ribosomal protein L21-A
- Chain Lq
- 60S ribosomal protein L42-A
- Chain V
- 60S ribosomal export protein NMD3
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