HL_9YDB_055

3D structure

PDB id

9YDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDB_055 not in the Motif Atlas

Homologous match to HL_9SUM_056

Geometric discrepancy: 0.1159

The information below is about HL_9SUM_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

9YDB|1|A|U|2920
9YDB|1|A|U|2921
9YDB|1|A|G|2922
9YDB|1|A|U|2923
9YDB|1|A|U|2924
9YDB|1|A|C|2925
9YDB|1|A|A|2926

Current chains

Chain A

25S RNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain V

60S ribosomal export protein NMD3

Chain W

Large subunit GTPase 1