HL_9YDB_058
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- UGAUCA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDB_058 not in the Motif Atlas
- Homologous match to HL_9PN5_064
- Geometric discrepancy: 0.1283
- The information below is about HL_9PN5_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_12125.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
9YDB|1|A|U|3068
9YDB|1|A|G|3069
9YDB|1|A|A|3070
9YDB|1|A|U|3071
9YDB|1|A|C|3072
9YDB|1|A|A|3073
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LT
- 60S ribosomal protein L19-A
- Chain LW
- 60S ribosomal protein L22-A
- Chain Lf
- 60S ribosomal protein L31-A
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