HL_9YDB_069

3D structure

PDB id

9YDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

9YDB|1|C|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDB_069 not in the Motif Atlas

Homologous match to HL_9PN5_076

Geometric discrepancy: 0.2179

The information below is about HL_9PN5_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_18050.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9YDB|1|C|G|124
9YDB|1|C|U|125
9YDB|1|C|A|126
9YDB|1|C|U|127
9YDB|1|C|U|128
9YDB|1|C|C|129

Current chains

Chain C

8S RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain LZ

60S ribosomal protein L25