HL_9YDC_004

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

9YDC|1|A|U|133, 9YDC|1|A|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDC_004 not in the Motif Atlas

Homologous match to HL_9PN5_004

Geometric discrepancy: 0.0974

The information below is about HL_9PN5_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72836.1

Basepair signature

cWW-F

Number of instances in this motif group

20

Unit IDs

9YDC|1|A|C|132
9YDC|1|A|U|133
9YDC|1|A|U|134
9YDC|1|A|C|135
9YDC|1|A|G|136

Current chains

Chain A

25S RNA

Nearby chains

Chain LP

60S ribosomal protein L15-A

Chain Lj

60S ribosomal protein L35-A