HL_9YDC_007
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 9YDC|1|A|G|218, 9YDC|1|A|A|219, 9YDC|1|A|G|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDC_007 not in the Motif Atlas
- Homologous match to HL_9PN5_007
- Geometric discrepancy: 0.0651
- The information below is about HL_9PN5_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27670.7
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 18
Unit IDs
9YDC|1|A|G|216
9YDC|1|A|U|217
9YDC|1|A|G|218
9YDC|1|A|A|219
9YDC|1|A|G|220
9YDC|1|A|A|221
9YDC|1|A|A|222
9YDC|1|A|U|223
9YDC|1|A|C|224
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- 60S ribosomal protein L4-A
- Chain La
- 60S ribosomal protein L26-A
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