HL_9YDC_020
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 9YDC|1|A|U|879, 9YDC|1|A|A|883, 9YDC|1|A|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDC_020 not in the Motif Atlas
- Homologous match to HL_9AXU_018
- Geometric discrepancy: 0.0821
- The information below is about HL_9AXU_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.4
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 13
Unit IDs
9YDC|1|A|A|876
9YDC|1|A|C|877
9YDC|1|A|G|878
9YDC|1|A|U|879
9YDC|1|A|G|880
9YDC|1|A|C|881
9YDC|1|A|A|882
9YDC|1|A|A|883
9YDC|1|A|A|884
9YDC|1|A|U|885
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LE
- 60S ribosomal protein L3
- Chain LR
- 60S ribosomal protein L17-A
- Chain Ll
- 60S ribosomal protein L37-A
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