HL_9YDC_055

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9YDC|1|A|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDC_055 not in the Motif Atlas

Homologous match to HL_9PN5_060

Geometric discrepancy: 0.1155

The information below is about HL_9PN5_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

9YDC|1|A|A|2897
9YDC|1|A|G|2898
9YDC|1|A|C|2899
9YDC|1|A|A|2900
9YDC|1|A|G|2901
9YDC|1|A|A|2902
9YDC|1|A|A|2903
9YDC|1|A|U|2904

Current chains

Chain A

25S RNA

Nearby chains

Chain LK

60S ribosomal protein L9-A

Chain Lo

Ubiquitin-60S ribosomal protein L40