HL_9YDC_065
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDC_065 not in the Motif Atlas
- Geometric match to HL_8OI5_068
- Geometric discrepancy: 0.1257
- The information below is about HL_8OI5_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01182.3
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
9YDC|1|B|U|32
9YDC|1|B|U|33
9YDC|1|B|C|34
9YDC|1|B|C|35
9YDC|1|B|C|36
9YDC|1|B|G|37
9YDC|1|B|U|38
9YDC|1|B|C|39
9YDC|1|B|C|40
9YDC|1|B|G|41
9YDC|1|B|A|42
9YDC|1|B|U|43
9YDC|1|B|C|44
9YDC|1|B|A|45
Current chains
- Chain B
- 5S RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain LG
- 60S ribosomal protein L5
- Chain LM
- Large ribosomal subunit protein uL5B
Coloring options: