Motif HL_01182.3 Version HL_01182.3 of this group appears in releases 4.14 to 4.14

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9		10		11		12		13		14	1-3	1-14	4-14	5-10	6-12	7-11	10-13
1	HL_9PN5_070	9PN5	0.1102	0	A3	5S rRNA	U	32	U	33	C	34	C	35	C	36	G	37	U	38	C	39	C	40	G	41	A	42	U	43	C	44	A	45	ncSH	cWW	cWS	cWW	tSH	tSH	tSW
2	HL_8OI5_068	8OI5	0.0883	0	3	5S rRNA	U	32	C	33	C	34	C	35	C	36	G	37	U	38	U	39	C	40	G	41	A	42	U	43	C	44	A	45	ncSH	cWW	cWS	cWW	ntSH	tSH	ntSW
3	HL_9SUM_065	9SUM	0.0000	0	B	5S rRNA	U	33	U	34	C	35	C	36	C	37	G	38	U	39	C	40	C	41	G	42	A	43	U	44	C	45	A	46	ncSH	cWW	cWS	cWW	ntSH	tSH	tSW
4	HL_9AXU_068	9AXU	0.0782	0	3	5S rRNA	U	32	U	33	C	34	C	35	C	36	G	37	U	38	C	39	C	40	G	41	A	42	U	43	C	44	A	45	ncSH	cWW	cWS	cWW	tSH	tSH	tSW
5	HL_8QYX_071	8QYX	0.0856	0	B2	5S rRNA	A	32	U	33	C	34	U	35	C	36	G	37	U	38	C	39	U	40	G	41	A	42	U	43	C	44	U	45	ncSH	cWW	cWS	cWW	tSH	tSH	tSW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUCCCGUCCGAUCA	3
UCCCCGUUCGAUCA	1
AUCUCGUCUGAUCU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCCCGUCCGAUC	3
CCCCGUUCGAUC	1
UCUCGUCUGAUC	1

Release history

Release	4.14
Date	2026-09-09
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
Heat map statistics: Min 0.07 | Avg 0.08 | Max 0.14

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Coloring options: Nucleotide numbers

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