HL_9YDC_066

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CGUCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDC_066 not in the Motif Atlas

Homologous match to HL_9SUM_066

Geometric discrepancy: 0.1868

The information below is about HL_9SUM_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59381.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9YDC|1|B|C|36
9YDC|1|B|G|37
9YDC|1|B|U|38
9YDC|1|B|C|39
9YDC|1|B|C|40
9YDC|1|B|G|41

Current chains

Chain B

5S RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain LG

60S ribosomal protein L5

Chain LM

Large ribosomal subunit protein uL5B