HL_9YDC_069
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 9YDC|1|C|C|84, 9YDC|1|C|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDC_069 not in the Motif Atlas
- Homologous match to HL_9PN5_074
- Geometric discrepancy: 0.5394
- The information below is about HL_9PN5_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68571.2
- Basepair signature
- cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9YDC|1|C|U|69
9YDC|1|C|G|70
9YDC|1|C|A|71
9YDC|1|C|A|72
9YDC|1|C|U|73
9YDC|1|C|U|74
9YDC|1|C|G|75
9YDC|1|C|C|76
9YDC|1|C|A|77
9YDC|1|C|G|78
9YDC|1|C|A|79
9YDC|1|C|A|80
9YDC|1|C|U|81
9YDC|1|C|U|82
9YDC|1|C|C|83
9YDC|1|C|C|84
9YDC|1|C|G|85
9YDC|1|C|U|86
9YDC|1|C|G|87
9YDC|1|C|A|88
9YDC|1|C|A|89
Current chains
- Chain C
- 8S RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain La
- 60S ribosomal protein L26-A
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Ln
- 60S ribosomal protein L39
Coloring options: