Motif HL_68571.2 Version HL_68571.2 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-15 | 4-11 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9PN5_074 | 9PN5 | 0.2554 | 4 | A4 | 5.8S rRNA | U | 69 | G | 70 | A | 71 | A | 72 | PSU | 73 | U | 74 | G | 75 | C | 76 | A | 77 | G | 78 | A | 79 | A | 80 | C | 83 | G | 85 | G | 87 | A | 88 | A | 89 | cWW | tSH | tHS | ncWw |
| 2 | HL_9AXU_072 | 9AXU | 0.0000 | 4 | 4 | 5.8S rRNA | U | 77 | G | 78 | A | 79 | A | 80 | U | 81 | U | 82 | G | 83 | C | 84 | A | 85 | G | 86 | A | 87 | A | 88 | C | 91 | G | 93 | G | 95 | A | 96 | A | 97 | cWW | tSH | tHS | |
| 3 | HL_8OI5_072 | 8OI5 | 0.4554 | 4 | 4 | 5.8S rRNA | U | 69 | G | 70 | A | 71 | A | 72 | U | 73 | U | 74 | G | 75 | C | 76 | A | 77 | G | 78 | A | 79 | A | 81 | U | 83 | G | 85 | G | 87 | A | 88 | A | 89 | ncWW | tSH | tHS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAA(PSU)UGCAGAAUUCCGUGAA | 1 |
| UGAAUUGCAGAAUUCCGUGAA | 1 |
| UGAAUUGCAGAUAUUCGUGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA(PSU)UGCAGAAUUCCGUGA | 1 |
| GAAUUGCAGAAUUCCGUGA | 1 |
| GAAUUGCAGAUAUUCGUGA | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.26 | Avg 0.27 | Max 0.50
Coloring options: