HL_9YDC_076

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

9YDC|1|E|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDC_076 not in the Motif Atlas

Homologous match to HL_9PN5_084

Geometric discrepancy: 0.1156

The information below is about HL_9PN5_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87268.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9YDC|1|E|G|330
9YDC|1|E|A|331
9YDC|1|E|U|332
9YDC|1|E|A|333
9YDC|1|E|G|334
9YDC|1|E|U|335
9YDC|1|E|G|336
9YDC|1|E|G|337
9YDC|1|E|C|338

Current chains

Chain E

18S rRNA

Nearby chains

Chain SV

40S ribosomal protein S8-A

Chain SX

40S ribosomal protein S11-A