HL_9YDC_083

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

9YDC|1|E|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDC_083 not in the Motif Atlas

Homologous match to HL_9SUM_085

Geometric discrepancy: 0.1931

The information below is about HL_9SUM_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9YDC|1|E|U|764
9YDC|1|E|G|765
9YDC|1|E|U|766
9YDC|1|E|U|767
9YDC|1|E|C|768
9YDC|1|E|A|769
9YDC|1|E|A|770
9YDC|1|E|A|771
9YDC|1|E|G|772

Current chains

Chain E

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain SW

40S ribosomal protein S9-A

Chain Sd

40S ribosomal protein S24-A