HL_9YDC_103

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GCUCAUAACC

Length

10 nucleotides

Bulged bases

9YDC|1|n|U|33

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDC_103 not in the Motif Atlas

Homologous match to HL_6UGG_005

Geometric discrepancy: 0.466

The information below is about HL_6UGG_005

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9YDC|1|n|G|31
9YDC|1|n|C|32
9YDC|1|n|U|33
9YDC|1|n|C|34
9YDC|1|n|A|35
9YDC|1|n|U|36
9YDC|1|n|A|37
9YDC|1|n|A|38
9YDC|1|n|C|39
9YDC|1|n|C|40

Current chains

Chain n

P site tRNA

Nearby chains

Chain D

messenger RNA

Chain E

Small subunit ribosomal RNA; SSU rRNA

Chain SF

40S ribosomal protein S16-A