HL_9YDD_005

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

9YDD|1|A|C|200

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDD_005 not in the Motif Atlas

Homologous match to HL_9PN5_005

Geometric discrepancy: 0.0469

The information below is about HL_9PN5_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

25

Unit IDs

9YDD|1|A|U|194
9YDD|1|A|U|195
9YDD|1|A|G|196
9YDD|1|A|G|197
9YDD|1|A|A|198
9YDD|1|A|A|199
9YDD|1|A|C|200
9YDD|1|A|A|201

Current chains

Chain A

25S RNA

Nearby chains

Chain La

60S ribosomal protein L26-A

Chain Lg

60S ribosomal protein L32