HL_9YDD_007

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

9YDD|1|A|G|218, 9YDD|1|A|A|219, 9YDD|1|A|G|220

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDD_007 not in the Motif Atlas

Homologous match to HL_9PN5_007

Geometric discrepancy: 0.0577

The information below is about HL_9PN5_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.7

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

18

Unit IDs

9YDD|1|A|G|216
9YDD|1|A|U|217
9YDD|1|A|G|218
9YDD|1|A|A|219
9YDD|1|A|G|220
9YDD|1|A|A|221
9YDD|1|A|A|222
9YDD|1|A|U|223
9YDD|1|A|C|224

Current chains

Chain A

25S RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A