HL_9YDD_043
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 9YDD|1|A|A|2256
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_043 not in the Motif Atlas
- Homologous match to HL_9H3G_052
- Geometric discrepancy: 0.0747
- The information below is about HL_9H3G_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.4
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9YDD|1|A|G|2253
9YDD|1|A|U|2254
9YDD|1|A|A|2255
9YDD|1|A|A|2256
9YDD|1|A|C|2257
9YDD|1|A|U|2258
9YDD|1|A|A|2259
9YDD|1|A|U|2260
9YDD|1|A|G|2261
9YDD|1|A|A|2262
9YDD|1|A|C|2263
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain D
- messenger RNA
- Chain E
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- Transfer RNA; tRNA
- Chain n
- Transfer RNA; tRNA
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