HL_9YDD_048
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 9YDD|1|A|A|2637, 9YDD|1|A|C|2644
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_048 not in the Motif Atlas
- Homologous match to HL_9SUM_048
- Geometric discrepancy: 0.055
- The information below is about HL_9SUM_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.4
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9YDD|1|A|U|2633
9YDD|1|A|U|2634
9YDD|1|A|A|2635
9YDD|1|A|A|2636
9YDD|1|A|A|2637
9YDD|1|A|C|2638
9YDD|1|A|G|2639
9YDD|1|A|A|2640
9YDD|1|A|U|2641
9YDD|1|A|A|2642
9YDD|1|A|A|2643
9YDD|1|A|C|2644
9YDD|1|A|G|2645
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LV
- 60S ribosomal protein L21-A
- Chain Ld
- 60S ribosomal protein L29
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