HL_9YDD_060
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9YDD|1|A|G|3116, 9YDD|1|A|C|3120
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_060 not in the Motif Atlas
- Homologous match to HL_9PN5_065
- Geometric discrepancy: 0.0763
- The information below is about HL_9PN5_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.5
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 13
Unit IDs
9YDD|1|A|C|3110
9YDD|1|A|U|3111
9YDD|1|A|G|3112
9YDD|1|A|A|3113
9YDD|1|A|A|3114
9YDD|1|A|C|3115
9YDD|1|A|G|3116
9YDD|1|A|C|3117
9YDD|1|A|C|3118
9YDD|1|A|U|3119
9YDD|1|A|C|3120
9YDD|1|A|U|3121
9YDD|1|A|A|3122
9YDD|1|A|A|3123
9YDD|1|A|G|3124
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LK
- 60S ribosomal protein L9-A
- Chain LQ
- 60S ribosomal protein L16-A
- Chain Lo
- Ubiquitin-60S ribosomal protein L40
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