HL_9YDD_074

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

9YDD|1|E|U|249

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDD_074 not in the Motif Atlas

Homologous match to HL_9PN5_082

Geometric discrepancy: 0.1191

The information below is about HL_9PN5_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9YDD|1|E|G|243
9YDD|1|E|A|244
9YDD|1|E|U|245
9YDD|1|E|G|246
9YDD|1|E|A|247
9YDD|1|E|U|248
9YDD|1|E|U|249
9YDD|1|E|C|250

Current chains

Chain E

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain SX

40S ribosomal protein S11-A