HL_9YDD_078
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 9YDD|1|E|C|402, 9YDD|1|E|G|403
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_078 not in the Motif Atlas
- Homologous match to HL_9PN5_086
- Geometric discrepancy: 0.2001
- The information below is about HL_9PN5_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.4
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9YDD|1|E|C|393
9YDD|1|E|C|394
9YDD|1|E|U|395
9YDD|1|E|G|396
9YDD|1|E|A|397
9YDD|1|E|G|398
9YDD|1|E|A|399
9YDD|1|E|A|400
9YDD|1|E|A|401
9YDD|1|E|C|402
9YDD|1|E|G|403
9YDD|1|E|G|404
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain ST
- 40S ribosomal protein S6-A
- Chain SV
- 40S ribosomal protein S8-A
- Chain Sd
- 40S ribosomal protein S24-A
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