HL_9YDD_081
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AAUGUAAAUACCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_081 not in the Motif Atlas
- Homologous match to HL_9PN5_090
- Geometric discrepancy: 0.0841
- The information below is about HL_9PN5_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68749.4
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9YDD|1|E|A|520
9YDD|1|E|A|521
9YDD|1|E|U|522
9YDD|1|E|G|523
9YDD|1|E|U|524
9YDD|1|E|A|525
9YDD|1|E|A|526
9YDD|1|E|A|527
9YDD|1|E|U|528
9YDD|1|E|A|529
9YDD|1|E|C|530
9YDD|1|E|C|531
9YDD|1|E|U|532
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain SW
- 40S ribosomal protein S9-A
- Chain Sd
- 40S ribosomal protein S24-A
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