HL_9YDD_085
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_085 not in the Motif Atlas
- Homologous match to HL_9PN5_095
- Geometric discrepancy: 0.1049
- The information below is about HL_9PN5_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
9YDD|1|E|A|900
9YDD|1|E|G|901
9YDD|1|E|G|902
9YDD|1|E|U|903
9YDD|1|E|G|904
9YDD|1|E|A|905
9YDD|1|E|A|906
9YDD|1|E|A|907
9YDD|1|E|U|908
9YDD|1|E|U|909
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain D
- messenger RNA
- Chain SB
- 40S ribosomal protein S5
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SZ
- 40S ribosomal protein S14-B
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