HL_9YDD_097
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 9YDD|1|E|U|1557, 9YDD|1|E|U|1558, 9YDD|1|E|A|1559
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_097 not in the Motif Atlas
- Homologous match to HL_9PN5_108
- Geometric discrepancy: 0.1517
- The information below is about HL_9PN5_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.4
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9YDD|1|E|A|1550
9YDD|1|E|U|1551
9YDD|1|E|U|1552
9YDD|1|E|G|1553
9YDD|1|E|U|1554
9YDD|1|E|A|1555
9YDD|1|E|A|1556
9YDD|1|E|U|1557
9YDD|1|E|U|1558
9YDD|1|E|A|1559
9YDD|1|E|U|1560
9YDD|1|E|U|1561
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S15
- Chain SH
- 40S ribosomal protein S18-A
- Chain SI
- 40S ribosomal protein S19-A
- Chain SM
- 40S ribosomal protein S29-A
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