HL_9YDE_014

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

9YDE|1|A|C|648

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDE_014 not in the Motif Atlas

Homologous match to HL_9PN5_014

Geometric discrepancy: 0.0665

The information below is about HL_9PN5_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

9YDE|1|A|U|640
9YDE|1|A|C|641
9YDE|1|A|U|642
9YDE|1|A|U|643
9YDE|1|A|G|644
9YDE|1|A|A|645
9YDE|1|A|A|646
9YDE|1|A|A|647
9YDE|1|A|C|648
9YDE|1|A|A|649

Current chains

Chain A

25S RNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain Lc

60S ribosomal protein L28

Chain Lg

60S ribosomal protein L32