HL_9YDE_039

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

9YDE|1|A|G|2111

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDE_039 not in the Motif Atlas

Homologous match to HL_9SUM_040

Geometric discrepancy: 0.1661

The information below is about HL_9SUM_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDE|1|A|G|2110
9YDE|1|A|G|2111
9YDE|1|A|U|2112
9YDE|1|A|A|2113
9YDE|1|A|C|2114

Current chains

Chain A

25S RNA

Nearby chains

Chain E

Small subunit ribosomal RNA; SSU rRNA

Chain LT

60S ribosomal protein L19-A

Chain LY

60S ribosomal protein L24-A